GraphHandler Struct Reference

Public Types
enum	graph_type { graph_none , graph_path , graph_naive , graph_gbz }

Public Member Functions
const PathHandleGraph *	get_any_graph (const GBWTConfig &config)
void	get_graph (const GBWTConfig &config)
void	use (std::unique_ptr< gbwtgraph::NaiveGraph > &source)
void	load_gbz (GBWTHandler &gbwts, GBWTConfig &config)
void	clear ()
void	serialize_segment_translation (const GBWTConfig &config) const

Public Attributes
std::unique_ptr< PathHandleGraph >	path_graph = nullptr
std::unique_ptr< gbwtgraph::NaiveGraph >	naive_graph = nullptr
std::unique_ptr< gbwtgraph::GBZ >	gbz_graph = nullptr
graph_type	in_use = graph_none

Member Enumeration Documentation

graph_type

enum GraphHandler::graph_type

Enumerator
graph_none
graph_path
graph_naive
graph_gbz

Member Function Documentation

clear()

void GraphHandler::clear

(

)

get_any_graph()

const PathHandleGraph * GraphHandler::get_any_graph

(

const GBWTConfig &

config

)

get_graph()

void GraphHandler::get_graph

(

const GBWTConfig &

config

)

load_gbz()

void GraphHandler::load_gbz	(	GBWTHandler &	gbwts,
		GBWTConfig &	config )

serialize_segment_translation()

void GraphHandler::serialize_segment_translation

(

const GBWTConfig &

config

)

const

use()

void GraphHandler::use

(

std::unique_ptr< gbwtgraph::NaiveGraph > &

source

)

Member Data Documentation

gbz_graph

std::unique_ptr<gbwtgraph::GBZ> GraphHandler::gbz_graph = nullptr

in_use

graph_type GraphHandler::in_use = graph_none

naive_graph

std::unique_ptr<gbwtgraph::NaiveGraph> GraphHandler::naive_graph = nullptr

path_graph

std::unique_ptr<PathHandleGraph> GraphHandler::path_graph = nullptr

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The documentation for this struct was generated from the following file:

• src/subcommand/gbwt_main.cpp